21 The month of january: “–extract range” and “–ban variety” not error away whenever its input documents incorporate an excellent chromosome password missing regarding the newest dataset.
: Repaired –meta-analysis-se-job insect. –meta-analysis-chr-profession and you may –meta-analysis-bp-profession flags extra. On innovation build, –dfam consistently problems out with an appropriate message, instead of possibly segfaulting, whenever no valid cases can be found.
28 Oct: –meta-analysis-se-profession banner extra, to have interoperation having previous PLINK dos.0 logistic regression productivity (and that spends a great ‘LOG(OR)_SE’ profession label so you’re able to disambiguate the high quality error’s products).
Fixed “–model gen” permutation testing bug
twenty-four Oct: Repaired uninitialized-variable bug in the –serving + –q-score-assortment. “–indep-pairwise 500kb . ” functions properly again (the earlier make necessary a space until the ‘kb’).
4 Mar: Brackets within the order-line let text message are in fact used in a way alot more similar to other gadgets. –tests today performs safely whenever a great numeric disagreement was step 1 earlier in the day the finish.
26 Could possibly get (beta six): –merge-equal-pos bugfixes. For folks who utilized –merge-equal-pos having .bed+.bim+.fam filesets where allele purchase have differed between .bim files, or having people .ped+.map fileset whatsoever, i encourage redoing that are running.
: –meta-data ‘report-all’ now accounts totally new statistics as opposed to ‘NA’ whenever N=step 1. Fixed an enthusiastic inaccuracy inside –adjust’s handling of really small p-values. –make-just-fam works securely with just .fam input once again.
fourteen Nov (beta 5): –document + –merge[-list] bugfix. map file is unsorted, but when you feel the options we recommend redoing one –document + –merge and –file + –merge-checklist multi-.ped merges performed having earlier plink step 1.9 yields. (.bed merging is actually unchanged, and you may –merge-checklist without –file is practically never inspired.)
fifteen Oct: A2 allele is starting to become constantly site into chr3 within our a thousand Genomes stage 1 packages. As a general rule, don’t be prepared to continue REF/ALT alleles straight that have PLINK step one.x, however, i tried to generate A2 continuously site in these documents nevertheless failed to a bit allow it to be; sorry about that. (As to the reasons try so it found today, more than dos.5 years adopting the truth? Just like the PLINK dos.0 now has a good –ref-from-fa banner that may with ease seek this type of mistake.)
thirteen October: “–freq counts” no further brings reversed efficiency when alleles was indeed turned out of the initial .bim/.bed acquisition. Fixed –logistic insect which will bring about spurious NA abilities.
eight October: Repaired part-case (a couple of five haplotypes do not have understood findings) bug during the –ld/–r2/–blocks/–clump’s analytical phasing procedure. 32-portion generate can kinds >2GB .sleep files versus crashing. –annotate and you can –gene-report now work on –allow-extra-chr.
15 Aug: –lasso is always to today work effectively whenever there are samples along with covariates establish nevertheless the chief phenotype behinderrt 4 Dating forgotten.
21 Will get: “–linear interaction sex” and you can “–logistic correspondence intercourse” now work properly when no covariates exist. –tucc put into advancement build.
20 March (beta cuatro): –pca var-wts now records allele codes. Slight mathematical phasing bugfix. –[max-]mac, –R, and –thin-indiv[-count] not classified because unpredictable. PLINK 2.0 leader builds are in reality available.
It bug is much more likely to help you bring about if for example the basic
thirteen November: –geno/–missing today beat heterozygous haploid calls while the nonmissing; that is in line with –mind, and you will PLINK step 1.07’s choices with –recode/–make-bed active. They have been now contradictory with what PLINK step one.07 performed without –recode/–make-bed; explore –make-bed + –set-hh-destroyed basic if you need the existing behavior. “–ci 0.95” no further supplies ‘L94’/’U94’ line names whenever plink will get unfortunate which have rounding. Minor –exclude/–extract/–flip bugfix for enter in data without newline in the bottom. –qfam[-within] bugfix. –dosage ‘sex’ modifier now works securely when particular trials had been blocked away (elizabeth.g. as some phenotypes have been lost).
20 September: VCF export not any longer removes an alt allele absent throughout the instantaneous dataset, on account of an effective retroactive inform to your VCF requirements.